When Jackson asks if she still loves him while he's dying, she responds that she does and embraces him when he is cured of being a Kanima and resurrected as a werewolf. His father, Gerard then arrives afterward to declare war, despite his protests. His eyes as a werewolf are blue, because as the Kanima he took innocent lives (regardless of his intent); Derek, Peter, and the twins Ethan and Aiden share this feature. Suddenly the hunters are attacked, and Derek comes face to face with a revealed-to-be-alive Kate Argent. Scott also thanks Allison due to his memories of her saving his life from Sebastien Valet, the Beast of Gévaudan (because Sebastien had confused Allison for her ancestor Marie-Jeanne, his sister, giving Scott the opportunity to escape).
Two years later, Stiles is seen with Scott, Lydia, Malia, Derek, Liam, and a beta named Alec planning to stop Monroe and the hunters.
After eight years as a coyote in the wild, Malia is very in touch with her animal side, is rather brash, quick to fight, and tends to speak her mind. In "Sundowning", Stilinski tells Scott and Lydia that "Stiles" is not a thing, but a person. It turns out he is genuine friends with Danny Mahealani and he actually cares more for Lydia Martin than he lets on, though he'd never admit it. In Season 1, Derek returns to Beacon Hills six years after the fire to investigate a mysterious alpha werewolf who had bitten Scott McCall and killed Laura. Derek is last seen being cornered in his loft by the Calaveras.
Using her new code as an anchor, Allison regains her confidence and skills, saving Malia Tate's life. Later, after using his natural intelligence to rescue Lydia from a steel jaw trap and helping to reunite the werecoyote Malia Tate with her father, Stiles' symptoms are cured. Despite this, Derek has remained loyal and continues protecting and fighting alongside Scott against numerous supernatural threats. Sheriff Stilinski and Stiles bring her home and she is reunited with Henry. One time, when Scott was only a toddler, Rafael came home drunk and had accidentally knocked Scott down the stairs bruising his head on the floor and she'd kicked Rafael out. He tells Scott the Dead Pool money is Derek travels to Mexico and tries but fails to help Liam control his shift on the full moon. In "Monstrous", Scott saves young Lori Rohr from death and then attempts to kill the assassin out of rage. She tries to teach him how to use a gun and they end up having sex. Later, she witnesses Scott and Derek Hale fight the Oni in their werewolf forms, revealing the supernatural lives of Scott, his Pack, and everything else to her, to her elation and inspiration. In "Illuminated" it's revealed Stiles was who left the message telling serial killer William Barrow to kill Kira Yukimura though he doesn't know why or even remembers it. As a result, many of the civilians inside Beacon Hills who previously had contact with the supernatural in some way turn on the supernatural population out of fear, become Hunters and begin hunting down every supernatural creature they can find. Sean has Scott's arms pinned, so to save Liam from falling to his death, Scott catches Liam with his fangs, Biting him, transforming Liam into his first Beta.
In Season 6B, Malia, who has successfully graduated, excitedly plans to travel to France, but is convinced to stay in Beacon Hills by Scott and Lydia when it becomes apparent that there is a new supernatural problem to deal with. She has been fashioned a customized sword by Ken that was forged with a "unique power". He is later injured by the Ghost Riders while trying to protect several people who saw the Ghost Riders at Scott's house.
Lydia believes her best friend is still with them. He is then advised that to counterbalance the burden he now has on his shoulders, he should save someone's life instead of taking one and that he'll start to feel better by forgiving himself. If he'd believed in the supernatural, believed that the girl psychically knew that Claudia was dying, he would've been with his wife in her final moments. He escapes after Hayden allows herself to be taken. The smell of blood leads her towards a murder scene, but is shot by Argent before she could investigate further. In the Season 2 finale, Lydia selflessly faces the Kanima and successfully coaxes the shapeshifter to transform back into Jackson, by holding up the house key Jackson had given her when they were together. Suddenly the hunters are attacked, and Derek comes face to face with a revealed-to-be-alive Kate Argent.
In the Season 1 episode "Formality", Allison is shaken up after the revelation, but she decides to be strong. In Season 1, "Co-Captain", Stilinski links the murders committed by the Alpha to the Hale House fire. The Anuk-Ite creates fear those it encounters, and uses that fear to sustain itself. As the dangers escalate, Erica and Boyd leave, frightened of the Argents' werewolf genocide.
It is then that a rift is created, from which someone appears. Scott and Kira finally go on their first date. In "Relics", Malia hears dying screams while running through the woods. He is disappointed to learn Theo no longer has the powers he stole from Josh and Tracy. He says he'll trust Corey when he does something trustworthy.